Healthy Double Chocolate Zucchini Muffins Recipe
If you’re looking for a sweet treat that satisfies chocolate cravings and sneaks in a dose of veggies, these Healthy Double Chocolate Zucchini Muffins are about to become your new obsession. Rich, moist, and studded with melty chocolate chips in every bite, they’re secretly wholesome thanks to whole wheat flour, Greek yogurt, and, of course, loads of fresh zucchini. Perfect for breakfast, an after-school snack, or a guilt-free dessert, these muffins prove that healthy eating can be downright decadent. Let’s turn that bumper crop of zucchini into something everyone will beg you to make again!

Ingredients You’ll Need
Every ingredient here is rustically simple, yet essential. Each one adds its own layer of flavor, moisture, or wholesomeness, making these muffins everything you want in a healthy, double chocolate treat.
- Shredded zucchini: Sneaks in nutrition and keeps the muffins perfectly moist without any veggie taste.
- Whole wheat flour: Adds nutty flavor and heartiness for more filling, fiber-rich muffins.
- Unsweetened cocoa powder: Deepens the chocolate flavor—use a good quality powder for best taste.
- Baking soda & baking powder: The dynamic duo that gives rise and fluffiness to each bite.
- Salt: Balances sweetness and enhances all the chocolatey notes.
- Coconut oil: Brings a subtle richness and keeps the crumb tender without dairy butter.
- Maple syrup or honey: Natural sweeteners that add flavor nuance and moistness.
- Large egg: The classic binder for hold and a bit of lift.
- Plain Greek yogurt: Adds protein and extra creaminess, keeping your muffins lush without excess fat.
- Vanilla extract: Rounds out all the flavors and brightens the cocoa richness.
- Mini dark chocolate chips: Little pockets of melty chocolate in every bite—plus a bit for sprinkling on top!
How to Make Healthy Double Chocolate Zucchini Muffins
Step 1: Preheat and Prep
Set your oven to 350°F (175°C) and get your muffin tin ready with 10 liners or a light greasing. A hot oven helps the muffins rise quickly for a domed top, and prepping the tin ahead ensures a stress-free scoop and bake process.
Step 2: Mix the Dry Ingredients
In a spacious mixing bowl, whisk together whole wheat flour, cocoa powder, baking soda, baking powder, and salt. This quick mix guarantees an even rise, a light crumb, and ensures every bite is packed with bold chocolate flavor from the cocoa.
Step 3: Combine the Wet Ingredients and Zucchini
In a second bowl, whisk together the melted coconut oil, maple syrup (or honey), egg, Greek yogurt, and vanilla extract until smooth and glossy. Next, stir in the shredded zucchini—pressing out the excess water first with a towel so your muffin batter isn’t soupy. The zucchini blends invisibly and gives gorgeous moisture.
Step 4: Bring the Batter Together
Pour the wet mixture over the dry ingredients and gently stir until just combined. This is the secret to tender muffins: don’t overmix. The batter will be thick and luscious. Fold in the chocolate chips so they’re beautifully distributed throughout.
Step 5: Fill, Top, and Bake
Spoon the batter into your prepared muffin cups, filling each about 3/4 full. Sprinkle a few extra chocolate chips on top for that bakery-style look. Slide the tray into the oven and bake for 18 to 20 minutes, just until a toothpick comes out with moist crumbs. Let your Healthy Double Chocolate Zucchini Muffins sit in the pan for 5 minutes, then move them to a rack to cool so they don’t steam.
How to Serve Healthy Double Chocolate Zucchini Muffins

Garnishes
Give your muffins a final flourish by dusting them with a sprinkle of powdered sugar, or add an extra handful of mini chocolate chips while they’re still warm so they melt enticingly over the tops. For a fancy touch, add a dollop of Greek yogurt or a few fresh berries alongside each muffin on the plate.
Side Dishes
Serve your Healthy Double Chocolate Zucchini Muffins with a cold glass of milk or an iced oat milk latte for the ultimate snack pairing. If you’re setting up a breakfast spread, they shine next to a bowl of fruit salad or a scoop of cottage cheese for a lovely, well-rounded morning meal.
Creative Ways to Present
Show off these muffins on a rustic wooden board lined with parchment paper or in a pretty woven basket—perfect for brunch tables or as part of a coffee date setup. For parties, slice them in half, spread with a swipe of almond butter, and stack them for an eye-catching (and protein-packed) display.
Make Ahead and Storage
Storing Leftovers
Your Healthy Double Chocolate Zucchini Muffins will stay fresh and tender for up to four days if stored in an airtight container at room temperature. If your kitchen runs warm, store them in the refrigerator to keep them from getting too soft or sticky.
Freezing
Want to make a big batch ahead? Go for it! Once completely cool, line the muffins up on a baking sheet and freeze until firm, then transfer to a zip-top freezer bag. They’ll keep in the freezer for up to two months—grab one whenever a chocolate craving strikes!
Reheating
To enjoy that fresh-from-the-oven taste, pop a muffin in the microwave for 20–30 seconds (even straight from the freezer). If you prefer, warm them in a low oven for a few minutes. The chocolate chips will get melty again, making each bite extra irresistible.
FAQs
Can I make these muffins gluten free?
Absolutely! Swap the whole wheat flour for your favorite cup-for-cup gluten-free blend and check that your baking powder is gluten free. The texture will remain perfectly moist with just a slight difference in crumb.
How do I prevent the muffins from getting soggy?
The most important trick with zucchini muffins is squeezing out as much moisture as possible from the shredded zucchini. Use a clean kitchen towel to wring it out, so your batter isn’t watery and the muffins bake up tender, not soggy.
Can I substitute another vegetable for zucchini?
Yes! Finely shredded carrots work beautifully in this recipe, though you’ll have a slightly sweeter taste and a pop of color. Just make sure to remove excess moisture, just like with zucchini.
What can I use instead of coconut oil?
If you don’t have coconut oil, melted butter or any neutral oil (such as avocado or light olive oil) will work. Each lends its own subtle flavor, but all keep your Healthy Double Chocolate Zucchini Muffins moist and delicious.
Are these muffins suitable for kids?
Kids absolutely love these muffins! The chocolatey flavor and tender crumb win every time, and most will never suspect the secret vegetable hidden inside. They make a great lunchbox treat or wholesome after-school snack.
Final Thoughts
If you’re craving something chocolatey but want to keep things light and wholesome, give Healthy Double Chocolate Zucchini Muffins a try. They’re easy to make, full of nourishing ingredients, and such a joyful way to sneak in extra veggies. Whip up a batch soon—you might just find yourself making them on repeat!
Print
Healthy Double Chocolate Zucchini Muffins Recipe
- Total Time: 30 minutes
- Yield: 10 muffins 1x
- Diet: Vegetarian
Description
Indulge in these Healthy Double Chocolate Zucchini Muffins for a guilt-free treat that’s packed with wholesome ingredients and decadent chocolate flavor.
Ingredients
Dry Ingredients:
- 1 cup whole wheat flour
- ⅓ cup unsweetened cocoa powder
- ½ teaspoon baking soda
- 1 teaspoon baking powder
- ¼ teaspoon salt
Wet Ingredients:
- 1 cup finely shredded zucchini (pressed to remove excess moisture)
- ¼ cup coconut oil, melted
- ⅓ cup maple syrup or honey
- 1 large egg
- ⅓ cup plain Greek yogurt
- 1 teaspoon vanilla extract
- ⅓ cup mini dark chocolate chips, plus extra for topping
Instructions
- Preheat oven and prepare muffin tin: Preheat oven to 350°F (175°C) and line a muffin tin with 10 liners or lightly grease.
- Prepare dry ingredients: In a large bowl, whisk together whole wheat flour, cocoa powder, baking soda, baking powder, and salt.
- Mix wet ingredients: In another bowl, combine melted coconut oil, maple syrup, egg, Greek yogurt, and vanilla extract until smooth. Stir in shredded zucchini.
- Combine wet and dry ingredients: Add the wet mixture to the dry ingredients and mix until just combined. Fold in the chocolate chips.
- Bake: Divide the batter into muffin cups, sprinkle extra chocolate chips on top, and bake for 18–20 minutes until a toothpick comes out with moist crumbs.
- Cool and serve: Let muffins cool in the pan for 5 minutes before transferring to a wire rack to cool completely.
Notes
- For added nutrition, incorporate 1 tablespoon of ground flaxseed or chia seeds.
- Muffins can be stored in an airtight container for up to 4 days or frozen for up to 2 months.
- Prep Time: 10 minutes
- Cook Time: 20 minutes
- Category: Breakfast, Snack
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 muffin
- Calories: 180
- Sugar: 10g
- Sodium: 140mg
- Fat: 8g
- Saturated Fat: 4g
- Unsaturated Fat: 3g
- Trans Fat: 0g
- Carbohydrates: 24g
- Fiber: 3g
- Protein: 4g
- Cholesterol: 20mg